PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS09450 (1107 amino acids)

SeqID: AZOBR_RS09450 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 129007: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS09450
MKNSDNGRIDRNDTLWYKDAVIYQLHVKAFFDADNDGIGDIAGLTQKLDYIQELGVTTLW
LLPFYPSPLRDDGYDIADYKAVNPSYGNLQDFKRFLRECHDRGLRVITELVINHTSDQHP
WFQRARQAKPGSNHRNFYVWSDTDQKYQGTRIIFCDTEKSNWTWDSEAQAYFWHRFYSHQ
PDLNFDNPKVLQEVLNVMRFWLDMGVDGLRLDAVPYLKEREGTNNENLPETHDVLKAIRT
EIDKGYGDRMLLAEANQWPEDVLPYFGDLEKGGDECHMAFHFPLMPRIYMAVAMEDRHPI
ADIMRQTPDIPDECQWAIFLRNHDELTLEMVTDRERDYLWDFYAADRRMRINLGIRRRLA
PLLQNDRRKIELLKSLLLSMPGTPVLYYGDEIGMGDNIYLGDRDGVRTPMQWSPDRNGGF
SRADPARLYLPAIQDPIYGFQAINVEAQQRSPSSLLNWMKRLIAVRQQHKAFGRGRFQLL
YPGNRKVLAYLRCHSTEEGDEVILCVANLSRSAQAVELDLKQFRGRVPVEMLGRTVFPPV
GDLPYLLTIPAYGFYWFALAAEAALPSWHETMPEPVPDLLTIVVRDGWQSLISGRAGEEL
ARDILQAYLPQQRWFAAKDRRIESAHIPMFARLNGPGDGFMMVRADVSLTGAKPQSYFLP
LAMSWEENAGNTGWPLLPFTLAKARRGPRTGAIYDAMQADAFTRSLLTALREGREVPASS
GHLRFSPTACMADLSVDDDTEIRRLGVEQSNSSILVGSQAVLKAFRRLTPGAHPELEVGR
FLTEVAGFQNTPPLLGSVEHVAEDGTPTALFVLQGYVRNQGDGWSSTVDSLVRDLDDIRL
GLSHDPEEPTEGEPFGMHAATMATLGQRTAELHCALAKRTGDPAFDPEPVTADDLKGWGE
AARRQAEAAFAALPGALDRLAPAVREQAESLLARRADVMNRLAELADTPPQGDKTRIHGD
YHLGQVLRAQNDWYIIDFEGEPAKSLEERRAKHSPLRDVAGMLRSFNYATWAALFRIDET
GVLEEAGAVMEAALDWERRSMQSFLEAYRAAMGACPDVPDGTTADRRLLALFLMEKALYE
IAYEAANRPNWIGIPVKGVLGLLDGES