PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS10470 (370 amino acids)

SeqID: AZOBR_RS10470 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2498933: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS10470
VTEASESLKTTPLHSLHLELKGKMVPFAGYDMPVQYPLGILKEHQHTRAKAGLFDVSHMG
QVRLTGEDPAAALESLVPGDIKGLARGRMRYTLFLNEQGGILDDLMVTNAGDHLFLVVNA
ARKDHDVAHMRERLKGKAEVELLDDLALMALQGPEAAAVLGRFIPEAATMKFMSYLPTTF
DGIPVIITRSGYTGEDGYEISCDKSDAETIARALLAEDEVEAIGLGARDSLRLEAGLCLY
GHDIDETTTPVESGLEWALSKRRREEGGFPGYAIIKDQLANGAPRRRVGLQPEGRQPARE
HTDVCDADGQKIGEVTSGGFGPTASAPVAMGYVDRAHAAVGTPVQLMVRGKPLAAKVAAM
PFVPQRYYRG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory