PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS12895 FitnessBrowser__azobra:AZOBR_RS12895 (1083 amino acids)

SeqID: AZOBR_RS12895 FitnessBrowser__azobra:AZOBR_RS12895
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599950: carbamoyl phosphate synthase large subunit [Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            4.99
    CytoplasmicMembrane    4.90
    Extracellular          0.10
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS12895 FitnessBrowser__azobra:AZOBR_RS12895
MPKRTDIKSICIIGAGPIVIGQACEFDYSGVQACKALREEGFRVILVNSNPATIMTDPGL
ADATYIEPITPAVVAKILEKERPDALLPTMGGQTALNTAMALSDDGTLERLGVEMIGAKR
DVIAKAEDRILFRDAMDKLGLESPRSRLVRNMQEATEALEFVGLPAIIRPSFTLAGTGGG
IAYNRAEFEDIVRGGLRASPVGEVLIEESVLGWKEYEMEVVRDKADNCIIVCAIENIDPM
GVHTGDSITVAPSLTLTDKEYQIMRNASIAVLREIGVETGGSNVQFAVNPANGRLIVIEM
NPRVSRSSALASKATGFPIAKIAAKLAIGYTLDELTNDITGTTPASFEPTIDYVVTKMPR
FTFEKFAGTEPLLTTSMKSVGEAMSIGRTFQESVQKALRSMETGLTGFNEVRIGDSDTPD
AAAIRGALARPTPDRLLVIAQAFRHGFTVAEVQQVSKYDPWFLEQIKAIVDREQAIRSGG
LPTDKAGWQSLKQMGFSDARLAELAGKSEGEAAEARRAAGVTPVFKRIDTCAAEFASRTP
YMYSTYETDGTGAAECESDPTEKKKVVILGGGPNRIGQGIEFDYCCVHAVYALREAGIET
IMVNCNPETVSTDYDTADRLYFEPLTAEDVIELVRVEQRNGTVLGCIVQFGGQTPLKLAD
ALEKAGIPILGTSPDAIDLAEDRERFQKLLHQLDLLQPANGLARSLEEAETVAARIGFPV
VIRPSYVLGGRAMEIVHDMAGLKRYMGNAVKVSGKNPVLIDSYLQDAIEVDVDVVADATG
QVYIAGIMEHIEEAGIHSGDSACALPPYSLPAETIAEIGRQGEALARALHVVGLMNVQFA
VKDGTVYILEVNPRASRTVPFVAKATGTAIAKVAARVMAGEKLADFTLNGPTPPHTAVKE
AVFPFARFPGVDIVLGPEMKSTGEVMGLDHNFALAFAKSQLGAGVTLPVQGTVFISVKER
DKPSAVQIGQKLHAMGFRVLATTGTAAALRQAGVPAESINKVVEGQPHIVDAMINGEVHL
VINTTDGAQALSDSFSLRRTALTYNLPYYTTMAGARAAVEAIAALRNGSLEVAPLQSYLS
GSY