PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS14960 (938 amino acids)

SeqID: AZOBR_RS14960 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16131905: formate dehydrogenase-H, selenopolypeptide subunit [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS14960
MSIQEIDYGTPARESATMVTLDIDGRTVTVPEGTSVMRAAMEAGITVPKLCATDMLDAYG
SCRLCMVEIEGRRGTPASCTTPVAPGMKVHTQNERLGRLRRGVMELYISDHPLDCLTCPT
NGNCELQDMAGAVGLRNVRYGYEGENHRAAVKDESNPYFTFDPSKCIVCSRCVRACGEVQ
GTFALTIDGRGFDSKVSPGALEQFMDSECVSCGACVQACPTATLTEKSLIELGQPEHSVI
TTCAYCGVGCSFKAEMKGTTVVRMVPHKDGGANEGHSCVKGRFAWGYATHADRQTQPMVR
ESIDDPWRVVSWEEAITYAATRLRAVQQKYGRGSIGGITSSRCTNEEVYVVQKMIRAAFG
NNNVDTCARVCHSPTGYGLKQTFGTSAGTQDFKSVDKSDVILVIGANPTDGHPVFGSRMK
KRLRQGAKLIVIDPRRIDLVRSPHVSATHHLQLRPGTNVAAMNALAHVIVTEELVDRNFV
ADRCDPMEFARWEAFVRDPRHSPENTEQYTGIPAAEMRAAARLYATGGNAAIYYGLGVTE
HSQGSTAVMGMANLAMATGNIGRDGVGVNPLRGQNNVQGSCDMGSFPHELTGYRHVSDDV
VRQQFEEVWNAALDPEPGLRIPNMFDSAVDGTFMGLFVQGEDIAQSDPNTQHVFAALRAM
EIVVVQDLFLNETAAFAHVFLPGTSFLEKDGTFTNAERRINRVRPVMPSKTGKQEWEVVC
DLATAMGYPMFYRSGAQIMDEIARLTPTFSGVSFEKLDRVGSVQWPCTDEDSVGTPIMHA
DGFVRGQGRFMITEYVPTEERASRFYPLILTTGRILSHYNVGAQTRRTANVAWHPEDILE
VHAHDAEERGIRDGDLVSIASRIGATTLRARISDRMPQGVVYTTFHHPVTGANVVTTENS
DWATNCPEYKVTAVQVTLSNHPSDWQIRRGDLVEVAAE