PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS19480 (556 amino acids)

SeqID: AZOBR_RS19480 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 416605: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS19480
MTGPFSRTASIFDRGLAPDPANHVPLSPLSFLKRAAKVYPDKPAIRHGRRTITYAQFHDR
VRRFAGALLRAGVRRGDTVSVLAPNVPALLEAHYAVPLAGAVLNALNTRLDAAAIAFILD
HSETKLLIVDRELSPVAKAALARTERPITLVEIADEQAPDAPSLGAVEYEDFLAAADPAP
WHGPDDEWQAIALNYTSGTTGNPKGVVYHHRGAYLNALGNAFTLNVRPESVFLWTLPMFH
CNGWTYSWAVTAAGGTHVCLRRVEPAAIFDAIAELGVTHLCGAPIVLNMLIHAPAAVRRP
APRRVIVGTGGAAPPSAVLAGMATLGFEVVHMYGLTECYGPATVCAPQDGWEDLDADGLA
LQFARQGVNHVAVEDATVLDRETGRPVPADAQTIGEIALRGNTVMKGYLKNPAATKEALK
DGWFRTGDLGVLHPDGYIEVKDRSKDIIISGGENISSLEVEEALYRHPAVLEAAVVARPD
DRWGESPCAFVTVKPGAERPSESDIIQWCRDRIAHYKVPRTVVFSDLPKTSTGKIQKTVL
RDAARELGERREAKSV