PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS19675 (400 amino acids)

SeqID: AZOBR_RS19675 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 21542067: Formyl-coenzyme A transferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS19675
MPGPLSHVRVLELSRVLAGPWAAQTLADLGADVIKVERPGAGDDTRAWGPPWAGEESAYF
LSTNRGKRSITIDFERPEGQELVRKLAAQADVVIENFKVGGLVKYGLDYDSLKAINPGLV
YCSITGFGQDGPYAKRAGYDFMIQGMGGLMSITGQPDTEAGGGPVKVGVAVTDVFTGLYA
TIGVLGALAHRDRTGEGQWVNLALLDVQVAVLANQAMNYLVGGKAPQRLGNAHPNIVPYQ
AFATLDGHIILAVGNDGQFAKFCQVAGRPELAQDPRYATNPARVANRKELVPILELLLEQ
RTSRDWLAALEAVGVPCGPINDVSQVFADPHVQARHIHQDLPHPTAGTVPTVASPIRYSA
TPIEHTAAPPTLGQHTDAVLEEALGLCAADIAALREKGVV