PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS20010 (365 amino acids)

SeqID: AZOBR_RS20010 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.50
    OuterMembrane          2.50
    Periplasmic            2.50
    Extracellular          2.50
    Cytoplasmic            0.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS20010
MKRRTFITSAGVGVAASTLAAPAIAQSNPEIKWRCASSFPKSLDTIYGGAERVAKRVAEM
TEGKFQIRTFASGEIVPGLQVLDAVKDGTVECGHTVSYYYVGKDPTFAFDAAMPFGLNAR
QQNAWMTHGGGMELMREFFKGYNIVQFAAGNTGTQMGGWFRNELKTVEDLKGLKFRIGGY
AGTILQRLGVVPQQIAGGDIYPALEKGTIDAAEWVGPYDDEKLGFNKVAKYYYYPGWWEG
GPQVSFLVSLPQWEQLPKHYQAILEAACADATADMVGKYDVVNMHALKRLVGAGTVLKPY
PRDILQACYQATFDVYEEEAAKNEKFRKVYEQWRKFRDEEYLWFRVAENTFDNFVYSAPT
PKKKS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory