PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS21115 (717 amino acids)

SeqID: AZOBR_RS21115 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS21115
MSEFPKKTQADWQTLAAKDLGANGTLEDLVWKTPEGLDVKALYTADDLEGLELDSLPGFP
PFTRGPRATMYAVKPWTIRQYAGFSTAEDSNAFYKANLKAGQMGLSVAFDLATHRGYDSD
HPRVVGDVGKAGVAIDSVEDMKILFDGIPLDKMSVSMTMNGAVLPILAGYIVAAEEQGVS
QDKLSGTIQNDILKEFMVRNTYIYPPEPSMRIIADIIEYTALNMPKFNSISISGYHMQEA
GATAVQELAFTIADGLEYVRAAMSKGLPVDKFAPRLSFFFSIGMNFFMEIAKLRAARLLW
STLMKQKFDPKDARSLALRTHCQTSGVSLTEQDPYNNVIRTTIEAMAAVLGGTQSLHTNA
FDEALGLPTKFSARIARNTQLIIAEESGVTNVVDPLGGSYYIENLTHSLANAALDLINKV
EDLGGMTKAVDSGMPKLLIEEAAARRQARVDRAEEVIVGVNKYRPENPEMVDVLDIDNTA
VRESQIARLNSVRANRDDAKCRAALEALTKAATEKSGNLLALAVEATRARATVGEISDAL
EKAFTRHVAVIRSVSGVYGAAYEGDEGFKRIQEEVSAFAAEEGRRPRILVVKMGQDGHDR
GAKVIATSFADIGFDVDIGPLFQTPEEAARQAVENDVHVIGVSSQAAGHKTLVPQLVEEL
RRQGAGDILVVCGGVIPPQDYDYLYKAGAAAIYGPGTNIPKAASDILAILRKQKAAA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory