PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS21145 (772 amino acids)

SeqID: AZOBR_RS21145 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600239: malic enzyme[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            4.99
    CytoplasmicMembrane    4.90
    Extracellular          0.10
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS21145
MSGDFDAMALEYHRNPKPGKLAIVATKPMANQRDLALAYSPGVAAASSAIAADPAQAAEL
TARANLVAVITNGTAVLGLGDIGPMAAKPVMEGKAVLFKKFAGIDCFDLELNEKDVDGLV
DTIVRLEPTFGAINLEDIAAPACFEVERRCRERMKIPVFHDDQHGTAIVVGAAVLNGLKL
VGKDISTVKVVSTGGGAAGIACLDLMLSLGVKRENVWLVDRIGVVHKGRNEEMNPYKDAY
AQETDARVLNDVIDGADIFLGLSGAKVLKPEMLVRMADKPLVLALANPEPEIMPDVARQA
RPDAIIATGRSDFPNQVNNVLCFPFIFRGALDVGATTVNEEMKIAATHAMASLAQAEPSD
VVAAAYVGENLRFGPDYILPKPFDPRLVIEVSSAVAKAAMESGVATRPIVDFRAYRDSLG
QYVFRSGLVMKPVITKAKAAPKRIVYAEGEEPRVLRCAQVVVDDGIAHPVLLGRADVIER
TIADMGLRIRIGKDVEVIEAARDLRCHNYAEVYRQLMGRRGVSPANALNVVRTQPSVFGA
LMVRRGEADGMVCGTSGRYGDHFNHVMDVIGLRKGVKVAGAMNGLISQKGTHFICDTYVN
PDPTAEQVAEIARLAAEEVKRFGIEPKVALLSHSNFGSADTPSARKMRLAYQLIAEENPD
LEVDGEMHADAALSEVLRKGVLPDSRLKGEANLLVMPTLDAANIAFNMLKIMADAQNVGP
MLLGAARPVHIVTPSVTTRGLVNMTAVAVVDAQLAAPVNAAPRPPALQDGED