PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS21180 (760 amino acids)

SeqID: AZOBR_RS21180 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 81695463: Formate acetyltransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS21180
MDSLMFEPKIPVAEAETPNPWRGFAPGSWRTTVDLRDFIVKNVRPYGGDGSFLSPASDRT
LSLWNKVRDLLKEERAAKGGVLDADTELVSSIVSHAPGYIDRELEVIVGLQTDKPLKRSI
MPFGGWRMVKTGLEAYGFKPSPKLDDVFPALRKTHNDGVFDVYTEEMLRCRKSGVITGLP
DAYGRGRIIGDYRRLALYGATFLIEDKKAQYKSLEVDRIDENTLRLREEITEQIRALRDL
VTMAASYGFDVSRPATNAFEAVQWTYLAYLAAVKEANGAAMSLGRVSSFLDVYIERDLRE
GRLDEAGAQELIDQFVIKLRMVRFLRTPEYDQLFSGDPTWVTECIGGMALDGRTLVTKGS
FRMLHTLQNLGPAPEPNLTVLWSESLPEGFKKFCAETSIKTCSVQYENDDLMRPFWGDDY
GIACCVSAMRIGKQMQFFGARANLAKTLLYAINGGRDEVSGEQVGPAFAPITGDVLDHDT
VVARLLPMMEWLARAYMNTLNAIHFMHDKYMYERLEMALHDRDVLRTMACGIAGLSVVAD
SLSAIKHATVKVVRDERGLATDFVIEGDYPAFGNNDDRVDGIAVWLVETFMGLLRKQKAY
RDAVPTQSVLTITSNVVYGKKTGNTPDGRKAGQPFAPGANPMHGRDRKGAIASMASVAKL
PYAHAQDGISYTFTIVPGALGPTEGERVANLVGMLDGYFGQGGHHINVNVFDRETLLHAM
DHPELYPQLTIRVSGYAVNFIKLTREQQMDVISRTFHGAH

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory