PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS22285 (667 amino acids)

SeqID: AZOBR_RS22285 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597208: methylcrotonyl-CoA carboxylase, alpha-subunit (biotin-containing)[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS22285
MFDKILIANRGEIACRVIRTARRMGIRTVAVYSEADARAMHVEMADEAVCIGPAPVGESY
LRGDAILEVAKRTGAQAIHPGYGFLSENAGFAAACAEAGVVFIGPPIEAIRVMGSKAESK
RVMSQADVPLVPGFHGEAQDLETLSAEAERIGYPVLVKASAGGGGKGMRVVRAAGEFADA
VAGAKREAKAAFGDDSVLLEKYLGRPRHVEIQVFCDTHGNGVYLFERDCSIQRRHQKVIE
EAPAPALPDDLRRRMGEAAVAAAKAVNYVGAGTVEFLYEDGGFYFIEMNTRLQVEHPVTE
KITGQDLVEWQLRVAAGGVLPLMQDQLTRRGHAFEARLYAEDPQREFLPAIGKLVRLRPP
AENEHVRVDTGVREGDEVTMFYDPMIAKLIVWDEDRDAALRRLRVALAAYEVVGVTTNVA
FLGAIAGHPAFRAVEIDTGFIERHRADLLPPPAPVPDRGLAIAALSVLLRRNADTRKARR
AASDPWSPWLSASGWRLNDDNHHDLRLMDGDTPRALTLHFRPDGYEIEVEGRPAIRAERV
TLDGETLTATIDAVRTRATVVCQGLDLTILSDGAVWRLHLDDPTARAAEQEGGSGRLTAP
MPGTVVRVLVEPGQTVEAGAPLMLLEAMKMEHTIKAPAAGTVSAVNFAAGDQVSEGVDLL
VLDVAEG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory