PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS22295 (535 amino acids)

SeqID: AZOBR_RS22295 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598084: geranyl-CoA carboxylase, beta-subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS22295
MTVLKSALNPRSAEFQTNADAMSTLVADLREKVGAIKQGGGAKARDKHLSRGKLLPRERI
RQLLDVGSPFLELSQMAAYKVYDDDIPAAGIITGIGSVAGQECMVVVNDATVKGGTYFPL
TVKKHLRAQEVAQQNNLPCIYLVDSGGANLPNQDEVFPDRDHFGRIFFNQANMSAQGIPQ
IAVVMGSCTAGGAYVPAMSDEAIIVRNQGTIFLGGPPLVKAATGEVVSAEDLGGADVHSR
TSGVTDHYAMNDAHALAMARKVVSNLNRSKRIDMDLREPQEPAYDPRELYGVIPSDPRKP
FDVREVIARVVDGSVLDEFKPLYGTTLVCGFAHIFGYPVGIIANNGILFSESALKGAHFV
ELCCQRGIPLVFLQNITGFMVGRKYEAGGIAKDGAKLVTAVACAKVPKFTVIIGGSYGAG
NYGMCGRAYSPRFLWMWPNSRISVMGGEQAAGVLAQVRRDAMESQGRSWAPEEEEAFKAP
IRQQYEDQGHPYYASARLWDDGIIDPADTRMVLGLGLSASLNAPVEKTTFGVFRM