PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS22555 (603 amino acids)

SeqID: AZOBR_RS22555 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [15 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 732104: Inner membrane protein yjiY]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS22555
MDHALTFVIATLCILALCYRFYGVFFVRKVLRADDSEVTPSHILADGRNYVPTKKWVNAG
QHFAAIAAAGPLVGPVLAAQFGYLPSFLWLLIGCVIGGAVHDTVVLFASMKHKGQSLSEV
AKAELGPVAGWCTGLAMLFIITITMAGLSMVVVHALERNAWGAFAVFMTIPIAVALGLYE
KITGSSKGATQVGIAAIAASVFAGPYIQGTVLGSWLTLHAETVALILPIYAFFATALPVW
MLLTPRGYLSSFMKIGVFGALVVGVVFINPEIRFPALTDFIHGGGPVLAGPVWPFISITI
ACGAISGFHAFIGSGTTPKLIDKWSDIRTVAFGGMLAECVVGVMALIAATSLHPADYFAI
NSSPAAFQALNMQVVDLPRLSQEIGLDLYGRTGGAVTLAVGMTEIFTRIPWFGTLASYFF
QFVVMFEAVFILTAVDSGTRVARYLIQDLGGDLYAPLKRLDWVPGSIAASVLACVAWGYL
LTSGDINSVWALFGVSNQLMASVGLIIGATIILRLGQKRVYMLTCLVPLAYLFVTVNYAG
YWMITNVYLNPLAKGYNVFNAGISIIMLSLGFVILIAALKKWKELLRIRKDNMPETLIAT
PAE