PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS22875 (598 amino acids)

SeqID: AZOBR_RS22875 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS22875
MASRIEDYALLGDCETAALLSAEGSIDWLCWPRFDSDACFAALLGTPENGRWLLRPSDPD
ARTTRRYRGDSLILETEFETAEGAVTMIDFMPPRGEASDIVRILHGRRGRVAMRMDLTLR
FGYGHVVPWVTRIGPHTLRAIAGPDMVVLHTSAPIHGENLSTVADFTVAEGESISFVMIY
SPSHLPLPEPVDAERALAETERFWAEWSGRCTYSGLWRDAVLRSLVTLKALTYRPTGGIV
AAPTTSLPEQLGGVRNWDYRYCWLRDATLTLLALMNAGYLQEARDWRDWGLRTIAGSPQQ
IQIMYGIAGERRLLEWEVPWLPGYEGASPVRVGNAAAPQLQLDVYGEMMDAAHQARMRGI
EIRPEGWQVQCALLDHMESVWDQPDEGIWEVRGGAKHFTHSKVMAWVAVDRMVKSAEKFG
LDAPLDRWKALRQAIFDDVCAKGYSKERNSFVQHYGASHVDAALLMLPMLGFLPVDDPRI
QGTVAAIERELLQDGLVMRYRTERTDDGLPDGEGVFLACSFWLADVYVLQGRQAEAEALF
NRLLALRNDLGLLSEEYDTTAKRLVGNFPQAFSHIALINTAFNLTRAEKPAEQRQDGD

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory