PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS24065 (392 amino acids)

SeqID: AZOBR_RS24065 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598993: probable aminotransferase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    8.46
    Cytoplasmic            1.33
    Periplasmic            0.21
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    CytoplasmicMembrane    8.46

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS24065
MRFSSLTDRIRGDRVAAWDIHFAAWTAKGRGEDVIVLSVGDPDFDTPAPVRDAAIAALHA
GDTHYTPIPGRPELRAALARDVARRTGLPVEPENVIVCAGAQNGLFNATLCLVEAGDEVL
VPEPMYLTYEACVRASGATLVPVAPDAATLRLDPAALAAAVTPRTRAIFLATPANPTGIV
MSAEELEAVADLARRHDLWVVADEVYASLTFDRPHIGIATLPGMAERTVTINSLSKSHAM
TGWRAGWVVAPAPLVAHMGTLALCMLYGLPGFVQQAALVAVEQGDEAVAAMREGYRRRRD
IALEALGSVPGLRCLKPEAGMFMLVDVRGTGLPTMEFAWRLFRETGVSVLDAGAFGPAAA
GCVRLSFAVSEAELAEACRRIAAFVTGLASGG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory