PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS25120 (962 amino acids)

SeqID: AZOBR_RS25120 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599966: probable ferredoxin[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS25120
MLPAPYDRLHAALREFMPDERLVTDPLRTLAYGTDGSFYRLIPKIVAIVEAEGEVVRLLN
LCRELKTPVTFRAAGTSLSGQAVTDSVLVLLGDSWRGCTIPPGAATVTLQPGVIGAEANR
KLAPFGRKIGPDPASIATAKIGGIAANNASGMCCGTAQNSYRTLASMRLVLADGTLLDTG
DAASRAAFAVSHGALLSGLSDLAARTRADDKLAERIRNKFRIKNTTGYSLNALVDFEEPV
EILQHLMIGSEGTLGFLSEITYNTVPEHAHKANALLMYPDIGEACRAVALMKPTPVSAVE
LMDRASLRSVEGKPGMPDFIGGLGPDASALLVEIRGEDAAALDANIAAVSAVIAQTQTLF
PPTFTTDAKLGESYWKIRKGLFPAVGAMRKVGTTVIIEDVAYPLDRLAEATVELQAMFLK
FGYTEAIIFGHALEGNLHFVFTQAFDTDEEVDRYRRFMDAVCDQVVRKYDGSLKAEHGTG
RNMAPFVEMEWGPQAYGLMKEIKALLDPQGLLNPGVILNDDPEAHLKNLKAMPAAHPLVD
TCIECGFCEPTCPSHKMTLSPRQRIVGWREISRLEATGADAARLGALHEAYDYQGIDTCA
ACGLCSTACPVGIETGLLIKAIRGDRRGTMAQGFGTYVAEHTAGALSVARTGLKLADLAK
RTLGDDTANGLFEKLRNVTGQRLPHLPRALPTPTNFTPLPQAKASADAPTANTPTVVYVP
SCTSRSMGPAANDPEKTPLPVKVEALFQKAGYRVAYPEQLASLCCGMPLESKGLAAQADA
KAEEMVRAIWAASADGTAPVVLDTSPCSFRLKKHLKDAGLQVLDLVEFIHDHLLDRLNFT
KQTEPVVLHLTCSTRRMGLDAKMKAVAAACATQVVVPEDVGCCGFAGDKGFTTPELNAHA
LRHLSKDIPAGAKAGYSNSRTCEIGLSDHSGLPYRSIVYLVDACSTPKAPATASARASEP
AF

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory