PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS25925 (427 amino acids)

SeqID: AZOBR_RS25925 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 3123196: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS25925
ITVTDDTTGKTVKLPLLEGETGPRAIDVRKLYAETGYFTFDPGFTSTASCESAITYIDGD
EGILLHRGYAIQDLAENCDYLEVCHLLLRGELPNPQQKEEFERTITYHTMVHEQLSRFYS
GFRRDAHPMAVMCGVTGALSAFYHDSTDILDPRQRMIAAHRLIAKMPTMAAMAYKYSVGQ
PFMYPRNDLSYAENFLYMTFGTPCETWKVDPVLARAMDKIFILHADHEQNASTSTVRLAG
SSHANPFACIASGIAALWGPAHGGANEAVLLMLEEIGSVERIPKFIKRAKDKNDPFRLMG
FGHRVYKNYDPRAKIMRQTCYEVLDVLGIKDEPHLAIAMELEKIALEDPYFVEKKLYPNV
DFYSGIILKAMGFPTSMFTVLFALARTVGWISQWQEMIEDPQQKIGRPRQLYTGNPGRAF
VPLNKRG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory