PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS27055 (384 amino acids)

SeqID: AZOBR_RS27055 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597578: L-lactate dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS27055
MAVTASLNIAEARQRARARLPRGLFEYIDRGAEDETGIATSKTALDSLVFKPRVLVDVSK
RDATTRLFGVDQPMPLVVAPTAVAGLVWYDGEVELAKAAAAVGIPFCVSTQSITSVERIA
GESGARLWFQLYVWRSRERTRELVRRAERAGAEALVLTVDTAVTPNREYNVRNGFGIPIK
PSVRAGLDCLAHPRWFAGVFAKYLRNGGVPTYAHYPDEFRTALGRVAVGDEIGLAQDVGW
GDVRSLRDAWKGKLILKGVLRADDAEKAAELGVDGIVVSNHGARNLDHAIHPVRCLTDIA
ERVGDRVTVLADSGVRRGSHVAGYLGLGAQGVLLGRAVLYGLATDGAAGAQAVLEMIRRE
LLTTMGFLGAPTVADIVGTVERPR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory