PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS30030 (729 amino acids)

SeqID: AZOBR_RS30030 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 118508: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.99
    Periplasmic            0.01
    Extracellular          0.01
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    9.99

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS30030
IKQAAADVAAPSRRGFLKGAGGALVLGAMLPRTGFASEAAAPKVVGPADPRPQAFIRIAA
DDTVTVLVKHLDKGQGIMTGLTTIVAEELDADWAQMRGAFAPADGALYANHFFGIQGTGG
STAVANSWDELRMAGAAARAMLVATAAARWSVPASPVTVEQGVVRHAASNRSARFGELAE
DAAKLPVPQNVALKDAKDYKLIGNPSLHRLDHVSKTDGTAIFAMDIRRPGQVTAVLARSP
RFGGTVKSVDAAAAKQVPGVLEVLTLPMGVAVVARNTWAAMKGREALTVEWDDAKAEMRG
TEEMLADYRKLADQPGNVATDTGDAAKALAGAAKVVEAEFVFPYLAHAPMEPLNATVELT
PDGGCTIWAGSQFQGVEQKVAAGILGCKPEQVVINTVWAGGSFGRRATPDADYIAEAVTI
AKAYGGKAPVHLVWTREDDIRGGRYRPLFLHKVKAGLDASGTLVAWRQSIVGQSFMIGTL
FEGFMVKNGVDATSVEGSSDMAYTVPNLHVDLHSPPSPVTTLWWRSVGHTHTAYAKEVMI
DELAAAAGKDPVAFRLEMLKDHPRLQGVLKLAAEKAGWGQPLPKGKGRGIAVHESFSSFV
AHVAEVSVDEQGRVTIDRVVCAVDCGQVVNPNIVEAQVSGGTGWAIGHALRDEITLTGGL
VDQSNFDAYQPLRNSEMPPIEVHILPSTARPTGVGEPGVPTAAPAVANAVFAATGKRLHH
LPFTRSGMV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory