PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS30410 (371 amino acids)

SeqID: AZOBR_RS30410 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 266444: Lactose transport ATP-binding protein lacK]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.99
    Cytoplasmic            0.01
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.99

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS30410
MNHQFSPTSLAAGMESVGVRIDGVDLSYGSHRVLKDIHLDIKPGEFFAFLGPSGCGKTTL
LRLIAGFNTAQRGAVTIGGRDISGLPAHKRDVGMVFQSYALWPHMTVRRNVAFGLEERRV
PRAEIERRVDAALDLVGLKHLADRRPSQLSGGQQQRVALARTIVIEPKVLLLDEPLSNLD
AKLRVQMRQELLSLQRKLGLTTIFVTHDQEEANTICDRIAVMEDGIVQQVGTPQELYDHP
ANLFVAGFLGTANVLEGQVRAVDGGTAFVMGGGVPIPLPHGVEPGAAGKLMFRPQNLFIR
QDGGPPRAGHVRLMGVVRHREFLGASIRYAVDIGGQQVQVDAPHQAGDALLPTDTPITLD
LAADKARFLRR