PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS30970 (374 amino acids)

SeqID: AZOBR_RS30970 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 62288063: D-amino acid dehydrogenase small subunit]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS30970
IAVIGAGVIGLSIAWRLAAAGCRVEVFDRGAAGRGASHAAGGMLAACVETEPGEESLLPL
TRASQDLWPAFAAELEAASGMAVDLRGEGTMVIALNADDAAKVRFLHDFQTRLGLPVEWL
SGAEVRRREPYLQPGVAGALFCAGDHQVDNRKVATALHAAALRAGAVVHEYAEVSRIEVR
GGRAVGIQVEDRLVEADQVVLAAGAWSGWIDGLSPAVRPPVRPVKGQMLCLRMDARLPLL
RHVVWTPGTYLIPRLDGRLLVGATTEERGFDDRLTAGGQFALLEGAWRALPGIAELPIEE
AWAGFRPGTRDDAPILGLSEVEGLVYATGHHRNGILLTPVTADSVARLVLTGEADPVIRP
FALDRFAQPKGAAA