PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS31445 (323 amino acids)

SeqID: AZOBR_RS31445 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 11128402: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS31445
MSLGNPAKGMLAAAVLAAAALFAAPASAEIKNLEIIAPANAGGGYDQHARAMQQVLQEHK
LASSVQVVNIPGAGGTIGLSQFVTAKKRNPGLMISGLGMIGAILINKSPVSLDQVTPLAR
LTGEYQPIVVAADSPLKTLDDLVKKFKADPGSVSWGGFAVGSPDHILYGLLVKAIGGDVS
KMNYIAAGAGGEMMASVLGGHITVATGGYNEMASQLQAGKLRALAISAPQRLPGIDVPTF
KEQGVDVELVNWRAVMAPGNLKASEKQVLDDAVGAMVRTDEWKRIAEERGWIDLYLPPDR
FAAFVKDERTRIEGVLMELGLVK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory