PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS31945 (585 amino acids)

SeqID: AZOBR_RS31945 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 39932465: Sulfoacetaldehyde acetyltransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS31945
MSAVTVLNNQATAATDAEPALTDGFQLVIDALKLNGIENLYVVPGIPISDLLRMAQGEGL
RVISFRHEQNAGNAAAIAGFLTKKPGVCMTVSAPGFLNGLTALANATTNCFPMILISGSS
EREIVDLQQGDYEEMDQLAIAKPLCKAAFRVLHAQDIGIAVARAIRAAVSGRPGGVYLDL
PAKLFSQVMDAAEGARSLVKVVDAAPAQLPSPDSVARALEVLKGAKRPLIILGKGAAYAQ
ADEAVRELVEKSGIPFLPMSMAKGLLPDTHPQSAGAARSMVLKDADVVVLVGARLNWLLS
HGKGKTWGEPGSKTFIQIDIEPREMDSNVAIVAPLVGDIGSCVSALTAGMAKGWTPPPAE
WTGAVSARKEANIAKMAPKLMSNASPMNFHGALGALRRVVQERPEALLVNEGANTLDLAR
GIIDMHQPRKRLDVGTWGVMGIGMGFAVAAAVESGKPVLAVEGDSAFGFSGMEVETICRY
NLPVCIVVFNNNGIYKGTDVNPTGGSDPSPMVFVPDSRYDKMMEAFGGAGVNVTTPDELY
RAVSAAMDSGRPTLINAVIDPNAGSESGNIGSLNPTSAVRKGPKT

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory