PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS32455 (332 amino acids)

SeqID: AZOBR_RS32455 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596032: phosphate acetyltransferase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            6.49
    CytoplasmicMembrane    3.24
    OuterMembrane          0.14
    Extracellular          0.14
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS32455
MARTLETTAAGCPARLMARSAALEPVPTAVVAAGSPVALESARRATALGLIEPVLVGDPT
AIADSARRIGWTLHGACVVPARDDAAAARIAVALARSGDVGALMKGHIHTDTLMLAALHP
KNGLRTGRRFTHAFHMTLPGSGRELVITDAAINVAPSLNTRLDIIRNAVELWRLVGGSDP
RVALLSCTEEVTERVPSSMDADRLTRLCQQEVPGATVFGPLALDLAVSAEAARIKNLTHP
CAGAADILVVPNIETGNALFKALVHFLDAVAAGVVLGAAVPIVLTSRADPPAARIAAAAI
AQIVAGRRRSATPGAPYPTTAAKGGAAPGLHA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory