PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_1079 (768 amino acids)

SeqID: Ac3H11_1079 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600239: malic enzyme[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_1079
MTQKLSAAEESLRDAAREYHRNPGRGKIAVTPTKPLSNQRDLSLAYSPGVAYPCLDIQAD
PSKAFDYTSRGNLVGVITNGTAVLGLGDIGPLAGKPVMEGKGCLFKKFAGVDVFDIELAE
RDPDKLVEIIAAMEPTLGGINLEDIKAPECFYIERELSKRMNIPVFHDDQHGTAIISSAA
LLNGLELVGKQIDQVKIAVSGAGAAAIACLNVMVGLGVKVENIFVCDSKGVIYEGRPGGY
DESKAAYAQKTDARTLADAVNGADVFLGCSAPGVLTAEMVKTMGPKPIILALANPEPEIR
PELAKAIRPDCIIATGRSDYPNQVNNVLCFPYIFRGALDCGATKITEAMKLACVRQIADL
AKADISEEVASAYAGKELTFGPDYLIPTPFDSRLILKIAPAVAKAAAESGVATRPIEDME
AYKETLSRFVYQTGMLMRPVINAAKALPDAKKRVAYADGEDERALRAAQMAIDDKIATPI
LIGRPAVIAARIAKAGLRMQLGKDVEVCNPEDDPRFRQYWEHYHQLMKRNGATPEVAKAA
VRRSNTIIASLMVKLGDADAMICGLVGTYETHLERIHSIIGRQEGARDYAALNALMTNRG
TLFIADTYVNEDPTAQQLADIAWMSVQEVQRFGLPPKVAFLSHSSYGSSKRASARKMREA
RDLFVAAHPEIECDGELHGDAALEPNIRNAYMADSTLTDSANLLICPNLDAANILYNVLK
TTTSGGVTVGPILMGGAATAYILTPAATVRRVFNMTALAVASAAARAA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory