PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_1601 (561 amino acids)

SeqID: Ac3H11_1601 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599890: acetolactate synthase large subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_1601
MNTTSLTPRTGGQILVQQLITHGVKQLFCVPGESYLAVLDALHDADIGVTVCRQEGGAAM
MAEAQGKLTGQPGICFVTRGPGATNASAGVHIAHQDSTPMILFVGQVARGAMGREAFQEL
DYSAVFGTMAKWVVQIDDPARVPELISRAFHVATSGRPGPVVVALPEDMLTEAATVADAL
PYQVTETHPGAAQLAELAQRLQAAKNPVAILGGSRWSEEAVREFTAFAEAWSIPVYCSFR
RQMLFPATHACYGGDLGLGVNPKLLARIKASDLVLVVGGRLSEVPSQGYELFDIPTPAQS
FVHVHADADELGKLYRPTQAIHATPQAFTAALNAVRPTASVAWKAHTEAAHAEYLAWSDP
APIRIPGNLQMGEVMQHLKSVLPADTIFCNGAGNFATWVHRFWPFTTYASQLAPTSGSMG
YGLPAGVGGKRLWPQREVVVFAGDGDFLMHGQEFATAVQYGLPILVVLLDNAMYGTIRMH
QEREYPGRISATQLKNPDFKAYAQAFGGHGERVERTEDFAPALARARASGLPSVLHCLID
PEAITPTGTLQGIRKAALAKQ

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory