PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_191 (548 amino acids)

SeqID: Ac3H11_191 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 416605: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_191
MTSIFDQHLPRTEANFAPLSPLSFIERTAEVYPDRLAIVHGTLRQTWAQTYARCRQLASA
LVQAGIGKNDTVAVMLPNTPPMVEAHFGVPMAGAVLNALNTRLDPEAIAFMLDHGEAKVV
LVDPEFTGTMAKALALRTGTTPIRVIEVQDALYGPAVQGLGGTDYDAFVASGDATFAWRL
PADEWDAIALNYTSGTTGNPKGVVYHHRGAASNAISNVLEWDMPKHAVYLWTLPMFHCNG
WCFPWTIAARAGVNVCLRRVDAQAIFDAIRTHGVTHYCGAPIVHGLLVNAPEAMKAGIPA
GVKAMVAGAAPPASMIEGMEKMGFDLTHVYGLTEVYGPATVCAKHEAWDQLDIGERARLN
ARQGVRYHLERDVRVLDPETMQPVPQDGETMGEIMFKGNIAMKGYLKNPKATEEAFAGGW
FHSGDLAVQYPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPDVLAAAVVAKPDAKW
GETPCAFVELKAGAEATPEDIVAHCKKHLAGFKVPRAVVFGELPKTSTGKIQKFELRKLA
GSAAAIDV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory