PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_1931 (727 amino acids)

SeqID: Ac3H11_1931 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596934: probable 3-hydroxyacyl-CoA dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_1931
MQTIRYELIPAQGTDGEVAVITFDETNSPVNTMCRQWQQELGEVTARVAADRERLGAALK
GIVLASAKTSFFAGADLKATMRLTPADAPNAFGEIERMKKHFRTLETLGIPVVACLNGAA
LGGGWEVALVAHYRIAVADPKIQFGLPEVTLGLMPGATGVTKMTRLLGLMGAQPYILEGK
LFNPAEALELQLVHELVATREQLLPAALAHISTHPHAVQPWDDKNYKMPGGTPANPKIAG
ALTVAPAMLKKTTRGRYPAPEAALAAMVEGAMVDYDTALRIESRYLARLMTGPVARNMIN
TFFFDMNAIKSGKSRPAVNGAVAPRYKPQKVGILGAGMMGAGIAWAQASRGIATVLKDVS
AEKAEAGKAYSAKLTQARVDKGRMTAEAQQALLSRITPTASAADLAGCDLIIEAVFESRD
LKAKVTQEAEPQLAPGGFFASNTSTLPISGLATASSRPEKFVGIHFFSPVDKMKLVEIIR
GNQTDDETVARAFDYVQALGKVPIVVNDSRGFYTSRTFGTFVMEGAAMLGEGIPAAAIEN
AAMQAGLPVGPLAVMDETALTLSVHVLDQTRADYATEGKTYTATPGELLVERMVKELKRP
GRAGGGGFYDYPAGAKKHLWPELKPLFEKPGVEWSVQEIQDRLLYRQAIETARCLAEGVL
TSVHDANIGSIFGIGFPAWTGGAMQFIYGTGVEAFLKRADELAAKYGTGFALTARARATV
ANFQPVY

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory