PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_2202 (535 amino acids)

SeqID: Ac3H11_2202 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_2202
MHAEPSSPALASAPVSALADAPPRSQLALRRVAIDTWRENVAYLHRDCAVYRAEGFQALS
KIEVRANGRRILATVNVVDDPAIVGCQELGLSEDAFAQLGVDNGHTVSVAQAEPPESMGA
LFRKIASERLTREDFGAIVRDIADHRYSKIELTAFVVACHRSELDREEVFFLTDAMVASG
RRLDWHEPLVVDKHCIGGIPGNRTTMLVVPIVAAHGMLCPKTSSRAITSPAGTADTMEVL
AKVELPLEQLADIVRDYRGCLAWGGTAHLSPADDVLISVERPLSIDSAGQMVASILSKKV
AAGATHLVLDIPIGPTAKVRSMPDAQRLRRLFEYVARRMGLSLDVVITDGRQPVGQGVGP
VLEARDVMRVLQNDPRAPDDLRQKALRLAGRLIECDPDVRGGDGYAIARDILDSGRALAR
MNAIIAAQGSTGFDHNHPALGALTLDVVAPASGVVSAIDNYQIACVARLAGAPKVPGAGV
DLMHKLGDTVAAGDLLYRVHASYPADLEFARHACERDSGYRLGTADEVPQVFVEF