PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_2215 (462 amino acids)

SeqID: Ac3H11_2215 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600515: phosphomannomutase AlgC[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_2215
VQPTPAIFKAYDIRGIVPSTLNEEVALGLGRAFGTAARAEGQTTVAVGRDGRLSGPAMSA
ALIQGLVEAGIEVIDVGLVTTPLLYFAASTLCNSGIQVTGSHNPKDYNGFKMVLNGRAIY
GEEIQGLRRTMEQESWQLAPGGSVRHVDVLPTYRERIVGDVKLARPMKIVVDCGNGIAGA
SAPAIFRALGCEVIELFSEVDGNFPNHHPDPSKPENLRDLIDALKASDAELGLAFDGDGD
RLGIVTKDGTNIFPDRQMMLFAQDVLSRVPGGEIIFDVKCTQRLAPAIAAAGGVPVMFKT
GHSLIKARMKETNSPLGGEMSGHIFFKERWYGFDDGTYAGCRLLEILSKSQDPSAVLNAL
PTSFSTPELNVACAEGEPHRLTAELQALAAGQFAAPATVSTIDGLRVDWPDGFGLIRASN
TTPVLVLRFEGHTPEALARIEAAMLALLHRVLPDAHVGAASH