PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_2298 (397 amino acids)

SeqID: Ac3H11_2298 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596359: succinyl-diaminopimelate desuccinylase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_2298
MSRTLHLAEQLIALPSITPDDAGCLNLLAARLAPLGFECERLDSGPADFRVSNLWAKRPL
PRDQLAQAAIKTVVFAGHTDVVPTGPLAQWSSDPFVPTHKDGKLYGRGASDMKTSIAAFV
VAVEEFLAATPEPLVQLAFLLTSDEEGPSVDGTKVVVEQLKARGEPLDYCIVGEPTSVEK
TGDMIKNGRRGTLSGKLSVRGIQGHIAYPQLARNPIHQALPALAELAATVWDHGNAFFPP
TSWQISNMHGGTGATNVIPGEVVIDFNFRFSTESTAEGLQQRVHAMLDRHGLEYDLRWTL
GGQPFLTTPGELVTAVQQAITAETSITTELSTTGGTSDGRFIAQICPQVIELGPPNASIH
KIDEHVVVADIEPLKNIYRRTLENLHAQALAATAVPA