PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_2939 (463 amino acids)

SeqID: Ac3H11_2939 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 61252084: Polyol:NADP oxidoreductase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_2939
MNFILHLGLGSFHRAHQAVYMHQLRQQGSTDWAIAGGNLRPDMADTIAALQAQGGRYTLE
TVTPQGERSYTVIESIQRVIPYQDDLAPLIAAGADPATRIISFTVTEAGYYLDAANQLDW
ATFADLRADLATVQAGQAGHTIYGGLASILRARMRAGAGPVTLMNCDNLRHNGDRSRGGL
LQFIDALGDAPLKGWVEQNTTSPNAMVDRITPRPTPDVAERVKTATGWDDKAALMGESFI
QWVIEDDFIAGRPAWEKVGVEMVQSVQAHEEAKIRLLNATHSCIAWAGTLAGYQYIHEGT
HDAAIRQMAHDYVTDDAIPVLLPCPIDLEAYRDVVLDRFGNPAIADTNQRVAMDAFSKIP
GMIAPTIRDKLARNQPFDSVAVLPALFLAYLQRWHAGQIPYTYQDQAMDPAVAHAICEAA
DPVAAYAADTTLWGEMASHPRLVDTLRKAYARVLAFVAQRTSA