PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_3427 (1243 amino acids)

SeqID: Ac3H11_3427 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 118508: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.82
    Cytoplasmic            0.15
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
  Final Prediction:
    CytoplasmicMembrane    9.82

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_3427
MNTPPSLRAHSPLTRADFHAAQGVLLVVRNPPPAPPPVKGQPALVAGNPAEGVEILIAVW
DDGSVTALNGHVDLGTGIRTALAQIVAEELDVPLAQVNMVLGDTTRAPNQGATIASASIQ
IHAKPLRTAAAQARHWLVAQAAERLGVPVEAMQVRAGVVQVTADPSRQVAYGALLAGAHT
TLELVDATPTKAAADYTVVGQSVPRVDIPAKVSGELVFVHDMRVPGMLHGRVVRPPYAGA
DHGDFIGNTLESVDQQSIAHIPGIRAVVVIRDFVGIVAEREEQAEQALRELKVRWKDWPG
FPRQDSAEALEQAIRANPATQRRLVDEGDVEGVLAALSADGQPMPRTYVWPYQMHGSIGP
SCAVAEWRSDDSTGRPRMNVWAGTQNPHVLRADLARLMGVGDVDIDLIRMEAAGCYGRNG
ADDVAADAALLSRAVGAPVRVQLTREQEHLWEPKGTAQLMQVRGGLKADGTVAAYDFETS
YPSNGAPTLALLLTRTIEPVAQAYEMGDRTARPPYQYDNLRVAVNDMPPIVRASWLRGVS
ALPNSFAHESYVDELATAAGVDPVQFRLQLLNDPRAAELVQATAEKAGWIRRTGPQQHPL
DGDWVQGQGFAYARYIHSKWPGFGAAWAAWVADVEVNKKTGEVHVRRVVVGHDAGLMVNP
AGVEQQVHGNVLQTTSRALKEQVTFEPVKQAVDNREWGSYPILSFREVPVIEVMHMPRQD
EAPLGSGESSSVPGTAAIANAIFDATGVRFRAPPFTPEVVRAGLNPLPGGAGNAAASGSP
PAEQAEVLSTLELPAPTVPASATWPAKRSPWARALALVAGGIAMGAALLGWRPSIAPVVQ
TVGASVYNAATIERGRLLAAAGDCAVCHTAPGGTPNTGGRAMETPFGKIYTTNLTPDAET
GIGQWSFSAFQRAMREGISQGGKHLYPAFPYTSFAKMSDDDLTALYAYLMAQPAVRAEVP
KTELTFPFSVRPLMAGWNALFHDATPFKPDPTRPPEWNRGAYLVQGVGHCGACHTPRNAL
GAELGGAAFLSGAMIDGWEAPALTGLSKAPVPWTADALYGYLRHGHSPQHGSASGPMAPV
VRELAHLPDDDIRAMASYLASFTAAEAATQPVSDPQQRAQTAVAQAAALAPQPGQAQRLF
DGACAACHHDGDGPKLLGVNVPLALNSNLHSDRPDNLLQVIVHGIREPAARDIGFMPGFG
HALSDAQITELAGYMRQRYAPGRPAWRDVPEALARVRAGPAHP