PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_3532 (424 amino acids)

SeqID: Ac3H11_3532 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 21542067: Formyl-coenzyme A transferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_3532
MSTPSSNAGALAGIKVLDLSRVLAGPWCTQVLADLGADVVKVERPGVGDDTRQWGPPFLK
DAEGNDTNQASYYTACNRNKRSVTIDMASPDGQALIRQMAQEADIVVENFKVGGLKQYGL
DHESLRALNPRLIYCSVTGFGQDGPYAERAGYDLMVQAMTGLMSITGQADTEPGGGPMRV
GVAVIDLFTGLYASNAILAALHVRDNAATGTGQGQHIDMALLDVGMAVLANQASGFLATG
KAPGRMGNSHPSLAPYQDFPTQDGNMLLAIGNDGQFQRFCAAANQPQWASDPRFATNTLR
VQNRTDLIPAMEAVTRTRTTADWIALLEDKAVPCGPINTIAQAFDDAQVQARGLAVTLPR
WKDGEAATDKVQQITGVASPLRLSATPPVLRNAPPALGQHTDEVLAEMGLDAARIAALRA
QGVV