PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_3533 (398 amino acids)

SeqID: Ac3H11_3533 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 45593149: Crotonobetainyl-CoA dehydrogenase (Crotonobetainyl-CoA reductase)]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_3533
MAHAAFQWDDPFLLNQQLTDDERAIRDAAAAYCQDKLAPRVLDAFRHEKMDVSIFREMGE
VGLLGPTIPEQYGGPGLSYVAYGLIAREVERVDSGYRSMASVQSSLVMVPINEFGTEAQK
QKYLPKLATGEWIGCFGLTEPDHGSDPGSMATRAYKVDGGYKLKGSKMWITNSPVADVFV
VWAKEVSEGGAVGPIRGFVLEKGMKGLTAPAIHGKVGLRASITGEIVMDDVFVPEENAFP
EVQGLKGPFTCLNSARYGIAWGALGAAEFCWHTARQYTLDRKQFGRPLAANQLIQKKLAD
MQTEIAIGLQACLQFGRMKDAGTASVEGTSIIKRNSCGKALDIARLARDMMGGNGISDEF
GVARHLVNLEVVNTYEGTHDVHALILGRAQTGIAAFSN