PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_3568 (594 amino acids)

SeqID: Ac3H11_3568 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [14 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_3568
MEFLTHNLAPIMFAGLICFLLVGFPVAFSLGACGLFFAFIGIELNVLPEALLQAVPLRIF
GIMQNDTLLAIPFFTLMGLILERSGMAEDLLDTIGQLFGPIRGGLALAVIFVGALLAATT
GVVAASVISMGLISLPIMLRYGYDRRLAAGVIAASGTLAQIIPPSLVLIIIADQMGRSVG
DMYKGAFLPGLMLTGFYALYIILLAVFKPQWVPAIPPEARTLRGDDGKSGVPSLLVLTGI
CVAASIYVAKNMPALHSWWSGETVDKVALDETIVVSMCFGVALAFVAASINKITRMGLLS
RVAERVTFVLIPPLLLIFLVLGTIFLGVATPTEGGAMGALGAGIMAIIRGRLTLSLLKQA
ITTTTKLSCFVVFILVGATIFGLTFQGVDGPLWVEHLLTGLPGGQLGFLIVVNIMVFFLA
FFLDFFELSFIVVPLLAPVAHKLGIDLIWFGVLLAVNMQTSFMHPPFGFALFYLRSVAPA
KEYMDKVTKKMIAPVTTPQIYWGAIPFLCIQLLMVGLIIAFPGIVSSGLDKEVAYDLDKV
RMEMEATMPGEAAEAADPTAGMEGAAAAPGSDTAAPAADDPLKALQDSMANEKK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory