PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_4104 (365 amino acids)

SeqID: Ac3H11_4104 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_4104
MTDAVDCVVVGAGVVGLAVARALALQGREVMVLEAADAIGTGISSRNSEVIHAGLYYPTG
SIKAQLCVRGKELLYAYCAERGVPHRRCGKLLVATSAAQLASVESIQARAQANGVLDLQW
LSRDEALALEPALECVGALYSPSTGIVDSHALMLALQGDLENAGGLVAVNSPLARAHIAE
GAINLEASDGTRLQARTVVNAAGLYAPALAARFVGLDPAHVPTAHFAKGSYFTLTGKAPF
SHLIYPVPEAAGLGVHLTLDLGGQAKFGPDVQWVTSADDLLVDPARGDAFYAEVRKYWPG
LRDGALAPGYAGIRPKIHGASQPAADFVIQGPAVHGVPGLVNLFGIESPGLTSSLAIAEH
VAALV