PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_4179 (459 amino acids)

SeqID: Ac3H11_4179 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 39932236: Taurine--pyruvate aminotransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_4179
MDGVWRDFQNPPHSFISSSTTTPTTMQQDRHFTNAALLTRRHAAVARGVGQAHDLFIQKA
RNAELWDVEGRRFIDFAGGIAVLNTGHLHAGVIAAVKAQLDLYTHTCFQVVAYEPYVEVC
ERLNTLAPGAFAKKSLLLTTGAEAVENAIKIARAYTKRPGVIAFTGGYHGRTNLTLGLTG
KVAPYKIGFGPFPGETYHALFPNALHGVSVEQALHSVELIFKNDIEPERVAAFIVEPVQG
EGGFYVAPPEFISGLKTLADRYGILLIADEVQTGAGRTGTWFASEQWPVAPDLITTAKSL
AGGFPLAGVVGRADVMDAPAPGGLGGTYAGSPVACAASLAVIEAFAQEKLLARSQDMGAL
LVRSLKDLAARIPAIGDVRGLGAMVAIELFENGDLSRPDAALTKQVVAEAARRGLILLSC
GTHGNVIRILVPLTASDELLHEGLAILADSLEAVATAAN

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory