PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_4315 (568 amino acids)

SeqID: Ac3H11_4315 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 1168475: Oligopeptide transport ATP-binding protein appD]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.99
    Cytoplasmic            0.01
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.99

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_4315
MTVSPVTATPPVLEVENLAIAYREKDHEQRVVHGVSFSIAPGEVVALVGESGSGKTTTAQ
SIIGLLADNGRVEQGAIRLNGTDIAGWSADRFDTVRGRVVSLIPQDPTSSLNPVRTAGEQ
VGEILQIHRYGDRQAIAQRVVELLAKVGLSQPELRARQYPHELSGGMKQRVLIAIAIALQ
PALIIADEPTSALDVTVQRRILDLIDGLRAEFGTAVLLVTHDLGVAADRAHRLVVLQGGR
IQEQGDTGSVLRNPQSAYTRKLLADAPSLASAAFRAPRVLVANDAPERPDDFAIVVEGLV
HDFPVAGRKEPFRAVDGVSFRVRRGTTHAIVGESGSGKTTTIRNVVGFRQPTAGHIVIEG
MDLTTLRGEALRQFRRTVQLVYQNPFSSLDPRQTIFQIIEEPLLNFDPLPAAERARRVHD
ILARVGLPPTVLERRPRALSGGQRQRVAIARALILQPRVLVLDEAVSALDVTVQAQILAL
LETLQRDLGLTYLFISHDLAVVRQIADTVSVLQGGRQVDAGRVEDVFLRPGSDYTRELIA
AIPGKKNPHHDPLTDLSSKTPRVLQQAA