PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_4342 (454 amino acids)

SeqID: Ac3H11_4342 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 39932236: Taurine--pyruvate aminotransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_4342
MSFVHIEKPAAGPDSPRMDAEWLDAHWMPFTGNRNFKAKPRMIVSGQGAYYTDADGRKIF
DGLSGLWCSGLGHGRKDVAEAIGKAAATLDYSPAFQFGHPASFALANKLKELTPAGLDYV
FFTGSGSESADTSLKMARAYWRAKGQASKTRLIGREKGYHGVNYGGISVGGIVGNRKTFG
QGIEADHLPHTQPPAGTFQKGMAEDGGRALADKLLDVIALHDASNIAAVIVEPFSGSAGV
VIPPKGYLERIREICTQNNILLIFDEVITGFGRCGAWTGAEAFGVTPDILNFAKQVTNGA
QPLGGVIATKEIYDTFISQGGPEYMLEFPHGYTYSAHPVACAAGNAVLDILQKEDMPGRV
KALAPHFENAVHGLKGAKHVADIRNYGLAAGITISALPSEPAKRPYEIAMKCWEKGFYVR
YGGDTIQLAPPFISTSAEIDRMVSALGDALHETA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory