PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_4483 (504 amino acids)

SeqID: Ac3H11_4483 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600548: glycolate oxidase subunit GlcD[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_4483
VAAMNTASSAPAGPTPAERAARQAEVVQALGQAVPAHALLWHSEDTTPYECDGLTAYRQR
PLVVCLPETYDEVQAVLRACHRLQVPVVARGAGTGLSGGAMPHAMGVTLSLAKFNRILNL
SPESRTAVVQSGVRNLAISEAAAPHNLYYAPDPSSQIACTIGGNVAENSGGVHCLKYGLT
VHNVLKVKGFTVEGEPVEFGSEALDSPGYDLLAAVIGSEGMLAVITEVTVRLIPKPQLAR
CIMASFDDVRKAGDAVAAVIAAGIIPAGLEMMDKPMTAAVEDFVHAGYDLTAEAILLCES
DGTPEEVEEEIGRMSEVLRAAGATAISVSRDEAERLRFWSGRKNAFPASGRISPDYMCMD
STIPRKRLADILLAIQEMEKKYQLRCANVFHAGDGNLHPLILFDANDADQLHRCELFGAD
ILETSVAMGGTVTGEHGVGVEKLNSMCVQFTAEENAQMFGLKHAFDPAGLLNPGKVIPTL
NRCAEYGKMLVRGGQIRHPALPRF