PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_4557 (411 amino acids)

SeqID: Ac3H11_4557 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 45593149: Crotonobetainyl-CoA dehydrogenase (Crotonobetainyl-CoA reductase)]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_4557
VKFKQALSSTMHVATPPAPRPPSTAHLALPFFDDAHRALAEGLVPWAAAQEVDETDDRAA
CRDWVKRLGAGGWLRYCVPAAHGGALPALDSRALVLLRETLAYHSPLADFAFAMQGLGSG
AITLAGSPAQQAHYLQGVARGELIAAFALSEPEAGSDVGAMKTIAENAYLSRGNGPKDSY
SLTGTKTWISNGGIADFYCVFAKTDPAGGTRGISAFIVDANTPGLDASRHIHVMAPHPLA
TLQFDQCTVPATALLGEENGGFKLAMRTLDIFRASVAAAALGMARRALAEAVHHARQRRM
FGQTLADFQLTQAKIGEMAALVDSAALLTYRAAWLRDTGQARVTAEAAMAKMTATENAQR
VIDMALQLHGGRGVEVGSKVESLYRDIRSLRIYEGATEVQQLIIGKAVLQE