PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_4909 (474 amino acids)

SeqID: Ac3H11_4909 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600548: glycolate oxidase subunit GlcD[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_4909
MNAPTAAAHLLPEIKLRDVPQALIDALQARFGAQCSLAQAVREQHGRDEGSLQAPPPSAV
VFAESTQDVADAVKLASQYEVPVIPYGAGSSLEGHLLAVQGGISIDVSRMNQVLSINAED
LTVTVQPGITRKALNEAIKDTGLFFPIDPGADASIGGMCATRASGTNAVRYGTMRENVLA
LEVVTASGEVIHTGTRAKKSSAGYDLTRLMVGSEGTLGIMTEITVRLYPLPEAVSAAICS
FPSIEAAVRTTIQTIQIGVPIARVELIDHHTVRMVNAHSKLTLREEPMLLMEFHGSPASV
KEQAEMVQDIASEFGGQAFEWASTPEERTRLWTARHNAYFAAVQSRPGCRAISTDTCVPI
SRLADCLLESVDEVEASGIPYFLVGHVGDGNFHFGYLIDPNSAEERTKAEAMNHTLVARA
LSMGGTCTGEHGVGVHKMGFLLDETGTGAVDMMRAIKRALDPKNILNPGKIFAL