PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_4989 (266 amino acids)

SeqID: Ac3H11_4989 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596826: probable enoyl-CoA hydratase/isomerase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            6.49
    CytoplasmicMembrane    3.24
    OuterMembrane          0.14
    Extracellular          0.14
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_4989
MKNTATTPATPPLLLEREGAIATLRFNRPEALNAIDVPMANAFLAAVQTVAADPAVRAVV
LCGNGRGFMAGGDLATLRADPVQSAIDILTPLNAALLLLAQMNAPVVAQVHGVAAGAGLS
LLLMADYVIAAEGTRLNLAYINLGTSCDVGASWALPRIVGVRQALEIALLGDAFTADDAL
RLGLVNRVVPAAELDSATAALAQRLASGPTLAYGAMKRLMRASMDHTLPEQLAAEKDAFV
HCAGTEDFRAGVEAFHLRQSASFAGR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory