Running PSORTb v3.0 on BPHYT_RS02085 (1298 amino acids)
SeqID: BPHYT_RS02085 Analysis Report: CMSVM- Unknown [No details] CytoSVM- Cytoplasmic [No details] ECSVM- Unknown [No details] ModHMM- Unknown [No internal helices found] Motif- Unknown [No motifs found] OMPMotif- Unknown [No motifs found] OMSVM- OuterMembrane [No details] PPSVM- Unknown [No details] Profile- Unknown [No matches to profiles found] SCL-BLAST- CytoplasmicMembrane [matched 1723836: LAO/AO transport system kinase] SCL-BLASTe- Unknown [No matches against database] Signal- Unknown [No signal peptide detected] Localization Scores: CytoplasmicMembrane 5.41 Cytoplasmic 4.35 Extracellular 0.11 OuterMembrane 0.10 Periplasmic 0.03 Final Prediction: Unknown (This protein may have multiple localization sites.) -------------------------------------------------------------------------------
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
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>BPHYT_RS02085 MTDLSTPQRAGSHKLPAGRRLRFVTAAALFDGHDASINIMRRILQASGVEVIHLGHNRSV DEVATAALQEDADGVAVSSYQGGHNEYFRYLVDLLRARGGERIKVFGGGGGVIVPEEISE LESYGVEKIYSPQDGQRLGLQGMIDDMIARCAEGARAAEAVGQSRVGEWVDEFSKRGLPR FDSRGDAGGDEDAVRNPFSQASHVGCATSVGHVANAADTADAADTADTADAADTADAADT ADTADTADTAIAANTANTANTANTANTANTANTANTSDPASSTFRRLAQLISAFEAGAVD ASAREKLSAQAQAKATATPVLGITGTGGAGKSSLTDELIRRFRLDYGDALTIAVLAIDPS RRKSGGALLGDRIRMNAIGDWGGGARVYMRSMATREASSEVSDSLPDALMLCKAAGFDLI VVETSGIGQGNAAIVPFVDESLYVMTPEFGAASQLEKIDMLDFAGFVAINKFDRKGAPDA LRDVAKQVQRNRADFAKPPEAMPVFGTIASRFNDDGVTALYRHVAEALRKHGLRSGGGRL AAPEGLRFSSGRNAIVPPARVRYLADIAQTIHAYRERADAQARLARERWQLVEARRMLGE AGTQAGAVTQSRASASGNSSGNPNANSDADSDADSDANANANANANANANANANANANAN ANANANASANANSNPDPNSNKHAPANVTSADTPSPLQQLDTLIAQRTASLGERERALLDT WPQTVAAYSGAEHIVRIRDREIRTALTVTTLSGSEVRKVSLPKFADHGEILRWLMLDNLP GYFPFTAGVFPFRRENEDPTRMFAGEGDPQRTNRRFKLLSEGMPAKRLSTAFDSVTLYGE EPDERPDIYGKVGNSGVSVATLDDMKTLYDGFDLCAPETSVSMTINGPAPTILAMFFNVA IDQQIARMTQQQGRPLTHDELSATRRAALENVRGTVQADILKEDQGQNTCIFSTEFSLKV MGDIQAYFVEHGVRNFYSVSISGYHIAEAGANPISQLAYTLANGFTYVEAYLARGMSIDD FAPNLSFFFSNGMDPEYTVLGRVARRIWAVAMRERYGANERSQKLKYHVQTSGRSLHAQE IDFNDIRTTLQALIAIYDNCNSLHTNAFDEAITTPTEDSVRRAVAIQLIINREWGLAKNQ NPNQGSFVIEELTDLVEEAVLAEFDRLTERGGVLGAMETGYQRGRIQDESMLYEHRKHDG SYPIVGVNTFLSAHPHEAPQPIALARSTDDEKQSQLQRLRAFQSQHRDAAPAALERLKRA VIDDENVFAVLMDVVRVCSLGQITHALFEVGGQYRRNM
Lawrence Berkeley National Laboratory