PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS02085 (1298 amino acids)

SeqID: BPHYT_RS02085 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            OuterMembrane                 [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 1723836: LAO/AO transport system kinase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    5.41
    Cytoplasmic            4.35
    Extracellular          0.11
    OuterMembrane          0.10
    Periplasmic            0.03
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS02085
MTDLSTPQRAGSHKLPAGRRLRFVTAAALFDGHDASINIMRRILQASGVEVIHLGHNRSV
DEVATAALQEDADGVAVSSYQGGHNEYFRYLVDLLRARGGERIKVFGGGGGVIVPEEISE
LESYGVEKIYSPQDGQRLGLQGMIDDMIARCAEGARAAEAVGQSRVGEWVDEFSKRGLPR
FDSRGDAGGDEDAVRNPFSQASHVGCATSVGHVANAADTADAADTADTADAADTADAADT
ADTADTADTAIAANTANTANTANTANTANTANTANTSDPASSTFRRLAQLISAFEAGAVD
ASAREKLSAQAQAKATATPVLGITGTGGAGKSSLTDELIRRFRLDYGDALTIAVLAIDPS
RRKSGGALLGDRIRMNAIGDWGGGARVYMRSMATREASSEVSDSLPDALMLCKAAGFDLI
VVETSGIGQGNAAIVPFVDESLYVMTPEFGAASQLEKIDMLDFAGFVAINKFDRKGAPDA
LRDVAKQVQRNRADFAKPPEAMPVFGTIASRFNDDGVTALYRHVAEALRKHGLRSGGGRL
AAPEGLRFSSGRNAIVPPARVRYLADIAQTIHAYRERADAQARLARERWQLVEARRMLGE
AGTQAGAVTQSRASASGNSSGNPNANSDADSDADSDANANANANANANANANANANANAN
ANANANASANANSNPDPNSNKHAPANVTSADTPSPLQQLDTLIAQRTASLGERERALLDT
WPQTVAAYSGAEHIVRIRDREIRTALTVTTLSGSEVRKVSLPKFADHGEILRWLMLDNLP
GYFPFTAGVFPFRRENEDPTRMFAGEGDPQRTNRRFKLLSEGMPAKRLSTAFDSVTLYGE
EPDERPDIYGKVGNSGVSVATLDDMKTLYDGFDLCAPETSVSMTINGPAPTILAMFFNVA
IDQQIARMTQQQGRPLTHDELSATRRAALENVRGTVQADILKEDQGQNTCIFSTEFSLKV
MGDIQAYFVEHGVRNFYSVSISGYHIAEAGANPISQLAYTLANGFTYVEAYLARGMSIDD
FAPNLSFFFSNGMDPEYTVLGRVARRIWAVAMRERYGANERSQKLKYHVQTSGRSLHAQE
IDFNDIRTTLQALIAIYDNCNSLHTNAFDEAITTPTEDSVRRAVAIQLIINREWGLAKNQ
NPNQGSFVIEELTDLVEEAVLAEFDRLTERGGVLGAMETGYQRGRIQDESMLYEHRKHDG
SYPIVGVNTFLSAHPHEAPQPIALARSTDDEKQSQLQRLRAFQSQHRDAAPAALERLKRA
VIDDENVFAVLMDVVRVCSLGQITHALFEVGGQYRRNM

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory