PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS02130 (308 amino acids)

SeqID: BPHYT_RS02130 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597207: 3-hydroxy-3-methylglutaryl-CoA lyase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS02130
MALPQQVKIVEVGPRDGLQNEKDFVPTAIKIELINRLSAAGFRNVEAASFVSPKWVPQMA
DGADVMAGIERRPGTIYSVLTPNLRGFEGALAARADEIVIFGAASEAFSQKNINCSIAES
IDRFVPVAQAAKEHGLRIRGSVSCALGCPYQGEVPVASVVDVVQRFAALGCDEIDIADTI
GVGTPKRAREVFEAVTQVFPRERLSGHFHDTYGQALANIYAALQEGIEIYHASVAGLGGC
PYAKGATGNVATEDVLYLMNGLGIETGIDLAQVVAIGDFISTSIGRPNVSRAGKALLAKA
RSEAANCV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory