PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS02305 (902 amino acids)

SeqID: BPHYT_RS02305 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597040: methionine synthase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS02305
HTMRLSGLEPFNVTSGTLFINVGERTNVTGSKAFARMILNDQFDEAVAVARQQVENGAQV
IDVNMDEAMLDSKAAMVRFMNLIASEPDIARVPIMIDSSKWEVIEAGLKCVQGKAIVNSI
SLKEGEEAFRHHANLIRRYGAAAVVMAFDEQGQADTFERKTQICKRSYDFLVNEVGFPPE
DIIFDPNIFAIATGIEEHNNYAVDFINATRWIKENLPYAKVSGGVSNVSFSFRGNDPVRE
AIHTVFLYHAIQAGMDMGIVNAGQLGVYADLDPELRERVEDVVLNRREDGTDRLLEIADK
FKTGAAKKEENLEWRNQPVEKRLSHALVHGITNFIVEDTEEVRAKIAAEGGRPINVIEGP
LMDGMNIVGDLFGQGKMFLPQVVKSARVMKQAVAHLIPYIEEEKKLLAEAGADVRAKGKI
VIATVKGDVHDIGKNIVSVVLQCNNFEVVNMGVMVSCNDILAKAKVEGADIIGLSGLITP
SLEEMAYVASEMQRDDYFRVKKIPLLIGGATTSRVHTAVKIAPHYEGPVVYVPDASRSVS
VASSLLSDEGAAKYLDELKSDYERIRVQHANKKALPMVTLAEARANKTKVDWASYQPVKP
KFIGRRVFKNFDLSELANYIDWGPFFQTWDLAGPYPAILNDEIVGESARRVFSDGKSMLA
RLIQGRWLQANGVIALLPANTVNDDDIEIYTDESRSEVALTWRNLRQQSVRPVVDGVMRP
NRSLADFIAPKDSGVADYIGMFAVTAGLGVDVKEKQFEKDHDDYSAIMLKALADRFAEAF
AEALHARVRRDLWGYANAETLSNDDLIAEKYHGIRPAPGYPACPDHLVKRDMFDVLHATE
IGMSVTESLAMLPAASVSGFYLAHPDSTYFSVGKIGQDQLEDYAKRMSLSKTDAERALAP
LL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory