PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS03225 (811 amino acids)

SeqID: BPHYT_RS03225 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598786: probable hydroxyacyl-CoA dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS03225
MSNLIIRKVAVLGAGVMGAQIAAHLINAKVPVLLFDLPAKEGPKNAIALKAIENLKKLSP
APFGVKDDAQYIQPANYDDDIEKLAECDLVIEAIAERMDWKHDLYKKVAPHLAPNAIFAT
NTSGLSITALSEGFSDELKARFCGVHFFNPPRYMHLVELIPTATTRPEILDQLESFLTSV
VGKGVVRAKDTPNFIANRVGIFSILAVVTEAAKFGLRFDEVDDLTGARLGRAKSATFRTA
DVVGLDTMAHVIKTMQDTLKDDPFFPVYETPAVLAELVKKGALGQKTGGGFYKKEGKAIK
VLDPKTGEYVDGGANADELVGRILKRPPAERLKLLRESEHPQAQFLWAIFRDVYHYIGVH
LESIADNARDVDLAIRWGFGWNEGPFEGWQTAGWKQVAEWVQEDIAAGKALSNVPLPSWV
LEGPVAEQGGVHTNEGSWSPASKTFVPRSSLSVYDKQVFRAPLVGETKADPKTYGKTLFE
TDAVRAWVDDRAGENDVLIVSFKSKMNTIGPSVIDGLTQAIELAEKDYKGLVVWQPTSLK
LGTPGGPFSAGANLEEAMPAFMMGGAKGIEPFVKKFQQGMLRVKYASVPVISAVSGIALG
GGCELALHSAKRVAHIESYFGLVEVGVGLVPAGGGLKEAALRAAEAATQVGATNDLLKFV
QKSFENAAMAKVSASALDARAMGYLKPSDTIVFNVFELLDVAKKEARALSSAGYRPPLRV
TQVPVAGRSAIATIKASLVNMRDGRFISEHDFLIASRIAEAVCGGDVEAGSLVDEEWLLQ
LERRAFVDLLGTQKTQERIMGMLQTGKPVRN

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory