PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS03855 (412 amino acids)

SeqID: BPHYT_RS03855 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 118627: Soluble hydrogenase, small subunit]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            4.99
    CytoplasmicMembrane    4.90
    Extracellular          0.10
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS03855
MPTSSFTSAASIVPCPVVESLDAILPEEPLLMMGAGPVPIPAAVAKANTIVINHLGATMV
KVIGQVKTMARYVFQTKSKWVLGVAGPGSAAMEMAISNLAWEGTRVLSIKNGFFSERMAE
MGRRVGAHVSVLDVADGAVASLDEVAEAIRRERPEVVTVVQGETSNTVWNYHLKDIAALA
KAAGALVVVDAVCTLSTMPLEMDAWGIDAVITGGQKGLSSIPGVSLIAFSDAAWTRVKTR
TAPNAHWCLDASLAENFWHNAGYHYTAPVSGVLALHEALRLVCAETLEKRFARHLKCSQA
LQEGISALGLKLYAPQACRLNSVVGIEVPAGLSPGDICGHISRHHQVEISGSFGLPIVRI
GQMGEQCREHNLFRTLHALGRTMVDLGSAVDLPAGVAALEKSLSGGARAVAR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory