PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS06655 (777 amino acids)

SeqID: BPHYT_RS06655 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic, CytoplasmicMembrane[matched 62297831: NADH-quinone oxidoreductase subunit 3 (NADH dehydrogenase I chain 3)]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.12
    CytoplasmicMembrane    0.88
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic (This protein may have multiple localization sites.) 9.12

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS06655
MVELEIDGKKVEVPEGSMVIQAAHKVDTYIPHFCYHKKLSIAANCRMCLVDVEKMPKAVP
ACATPVSAGMIVRTKSDKAVKGQQAVMEFLLINHPLDCPICDQGGECQLQDLAVGYGKSG
SRYSEEKRVVFHKNVGPLISMEEMSRCIHCTRCVRFGQEVAGVMELGMLGRGEHSEITSF
VGKTVDSELSGNMIDLCPVGALTSKPFRYSARTWELSRRKSVSPHDSVGANLVVQVKNNR
VMRVLPFENESINECWISDKDRFSYEGLNSPERLTQPMLKQGGKWVETDWQTALEYVVKG
LKGIKGDHGANALAALGSAHSTVEELFLLKQLAQAVGTPNVDFRLRQSDFSAPVNGTPWL
GTAIADLSNVDAALVIGSDLRRDHPLFAARLRQAAKGGAKLTLVQSTNDDALIPQAERVV
AAPSAWLDALAGIAGAVSEGNGVALPEAFAGTQPTDANKKVAKSLATGERRLVLLGNSAV
RHPDFAAIHAAAQWIADATGATLGFLTEAANTVGAHLVNALPGEGGLNAREVFEQPRKGY
VLLNVEPEFDTANPAQALAALKQAEMVVVMSPFQTGAEYADVLLPIAPYTETAGTFVNAE
GTVQTFNGVVRPLGDTRPAWKVLRVLGSLLGLPGFEFDTSEEVRTAALGDGELNSRLSNK
TSATVARGKAAKAAEGKFERLANVPIYHADALVRRAESLHLTAAARAANSVGLPAGLFDK
LGLKEGDAVRVRQGEQSVQLPAVRDANLAETVVRVSAATPAGAALGSLFGELVVEKA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory